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Journal of Animal Ecology

Wiley

Preprints posted in the last 90 days, ranked by how well they match Journal of Animal Ecology's content profile, based on 63 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

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Post-fledging space use and survival in hand-reared versuswild juvenile herring gulls

Allaert, R.; Van Malderen, J.; Muller, W.; Stienen, E. W. M.; Martel, A.; Lens, L.; Verbruggen, F.

2026-03-05 animal behavior and cognition 10.64898/2026.03.03.709292 medRxiv
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Parental care can shape post-fledging behaviour through provisioning, guidance and social information, yet its absence may alter how young birds establish space use and habitat preferences. We tested the consequences of absent parental care by comparing, hand-reared juvenile herring gulls released without parents with wild, parent-reared conspecifics, focusing on the first two months after fledging. Wild juveniles frequently revisited their natal nest during the first month, whereas hand-reared birds rarely returned to the release site; revisits declined in both groups by the second month but remained more common in wild birds. Wild juveniles used smaller ranges that subsequently expanded, while hand-reared birds began with larger ranges that later contracted, leading to convergence. Contrary to expectation, wild juveniles occurred in areas with higher human population density than hand-reared birds. Habitat use also differed between groups and changed over time. Early on, wild juveniles concentrated activity in anthropogenic and marine habitats, whereas hand-reared birds used rural green habitats more. Later, both groups shifted away from marine areas towards rural green habitats, reducing but not eliminating between-group differences. Short-term survival, did not differ between hand-reared and wild juveniles, indicating that parental care primarily reshaped early space use and habitat choice rather than immediate survival.

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Diet and breeding productivity in European Shag (Gulosus aristotelis): insights from two Portuguese colonies

Vieira, B.; Goncalves, D.; Oliveira, N.

2026-03-30 ecology 10.64898/2026.03.29.715095 medRxiv
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Climate change and anthropogenic pressures are reshaping marine food webs, altering prey availability and affecting top predators. The European Shag (Gulosus aristotelis), a coastal demersal seabird, provides a valuable model for examining environmentally mediated dietary variation, given its trophic plasticity and capacity to adjust prey use according to local availability, while also allowing assessment of potential demographic consequences. This study investigated spatial and temporal variation in diet at two Portuguese colonies (Berlengas and Arrabida) between 2016 and 2024 and assessed long-term reproductive productivity at Berlengas. A total of 468 regurgitated pellets were analysed, and diet composition was quantified using the Index of Relative Importance (IRI). Generalised additive models were applied to assess environmental, spatial, and period-specific effects on diet composition, while reproductive productivity was modelled in relation to prey biomass. Diet variation was primarily explained by environmental predictors, including sea surface temperature, chlorophyll-a concentration, and zooplankton, whereas year per se had no significant effect, indicating environmentally mediated bottom-up effects. Spatial differences between colonies reflected contrasting prey field structures, and period-specific patterns suggested increased specialisation during breeding. Higher biomass of sandeels (Ammodytidae) was positively associated with reproductive output, whereas shifts toward lower-energy prey were associated with reduced productivity. These findings demonstrate that environmentally driven dietary change has measurable demographic consequences, underscoring the importance of bottom-up processes in shaping seabird population dynamics and informing conservation strategies under ongoing climate change.

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Fitness costs of parasitism depend on fine-scale density and resource availability in a wild ungulate

Hasik, A.; Morris, A.; Morris, S.; Maris, K.; Butt, S.; Sweeny, A. R.; Pemberton, J. M.; Albery, G. F.

2026-04-09 ecology 10.64898/2026.04.07.716954 medRxiv
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Resource competition and parasite exposure both present common density-dependent fitness costs for wild animals. Because launching effective immune responses is costly in terms of resources, parasites fitness costs should be further exacerbated in high-density, resource-depleted areas. To disentangle these relationships, we related density, parasitism, and resource availability to survival and fecundity across lifespan in a long-term study of wild red deer. All fitness measures declined with a combination of parasite count, greater density, and reduced resource availability. Beyond these relationships, as expected, local density and resource scarcity exacerbated survival costs of parasitism in calves, effectively undermining tolerance of infection. However, these synergistic relationships faded in yearlings and then reversed in adults, likely through age-structured selection biases. These findings emphasize that the costs of parasites and resource scarcity can be synergistic and intertwined with density in wild populations, accentuating the value of incorporating resource competition when examining parasite-dependent population regulation.

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Simulated microgravity alters short-term evolutionary trajectories of Orsay virus in Caenorhabdidits elegans

Villena-Gimenez, A.; Castiglioni, V. G.; Elena, S. F.

2026-05-14 evolutionary biology 10.64898/2026.05.14.725097 medRxiv
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BackgroundEnvironmental conditions shape the evolutionary trajectories of RNA viruses, yet little is known about how complex physical stressors such as microgravity influence host-virus interactions and viral evolution. Here, we investigated the short-term evolutionary consequences of simulated microgravity on the Caenorhabditis elegans - Orsay virus (OrV) system. MethodsOrV was subjected to six serial passages in hosts acclimated to low-shear modeled microgravity, with parallel evolution under standard-gravity. Evolutionary outcomes were evaluated using virulence, transmission, and replication traits, all measured under standard-gravity conditions. ResultsViral load fluctuated across passages in both environments, with lower mean accumulation in microgravity-evolved lineages. After evolution, we detected no significant changes in virulence. Transmission increased in standard-gravity lineages but not in microgravity-evolved ones, while viral replication decreased in all lineages, with a stronger decline in those evolved under microgravity. However, the magnitude of phenotypic changes was generally modest. DiscussionThese results indicate that evolution under microgravity can alter viral phenotypic trajectories over short timescales. However, because all traits were assayed under standard-gravity conditions, we cannot directly assess local adaptation to microgravity, and the observed differences may reflect environment-specific trade-offs rather than reduced fitness per se. Furthermore, the limited number of passages and the modest magnitude of phenotypic change suggest that evolutionary responses may still be in an early stage. ConclusionOverall, our findings provide initial evidence that simulated microgravity can influence the evolutionary dynamics of an RNA virus, while highlighting the need for reciprocal fitness assays and longer-term experiments to fully characterize adaptation to altered gravitational environments.

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Estimates of habitat selection reveal distinct habitat associations across life-stages in three coral-reef damselfish.

Sciamma, G.; Fakan, E. P.; Hoey, A.

2026-03-27 ecology 10.64898/2026.03.26.714170 medRxiv
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Understanding habitat association of animals and how they change through ontogeny is critical to predict the likely effects of habitat change on populations. We investigated how fine scale habitat associations of three common coral reef damselfish species changed among life-stages on reefs surrounding Lizard Island, northern Great Barrier Reef. All three species showed distinct habitat selection at settlement, however the degree to which these initial associations changed through ontogeny were species specific. Pomacentrus amboinensis associated with sandy areas throughout all life-stages; Pomacentrus chrysurus settled to areas with high cover of sand and rubble, but displayed no clear habitat preferences as juveniles or adults. Pomacentrus moluccensis settled to areas with high cover of fine branching corals before shifting to areas with relatively high cover of soft corals as adults. We also compared two different approaches to estimate habitat selection; one that quantified the benthic composition within the approximate home range of individuals versus a more widely used approach of recording a single point underneath the focal individual when they were first observed. Although results were broadly similar, the benthic composition approach revealed details that was overlooked using the single point method. Decreases in the availability of any of these preferred benthic habitats may adversely affect future populations, therefore understanding habitat associations and their transitions among life stages will be crucial in predicting future reef fish communities under ongoing coral loss and habitat change. This will require to systematically study a broader range of species, integrating relevant spatial and temporal scales.

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Comparing 3-D visual and 2-D tactile encounter rates in benthic and pelagic habitats

Forbes, E. J.; Stockwell, J. D.

2026-04-24 ecology 10.64898/2026.04.24.720635 medRxiv
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Encounter rate models are important tools for evaluating and estimating trophic interactions between species. While encounter rate parameters have been measured for many freshwater pelagic fishes, most benthic fishes remain mostly unstudied. Those few efforts to generate encounter rate models for benthic fishes often hold mathematical assumptions based on visual foraging, despite the many cases in which benthic fishes employ the lateral line to forage. Furthermore, encounter rate models are rarely compared, despite the many cases in which prey animals face predation risk from multiple types of predators. For example, the macroinvertebrate Mysis is exposed to both benthic and pelagic predation risk during diel vertical migration (DVM). Comparing the risks between habitats could help evaluate predation risk as an ultimate cause of their DVM behavior. We created a novel encounter rate model based on lateral line ("tactile") foraging by sculpins (Cottidae) given the saltatory (stop-and-go) nature of their movement. The tactile model demonstrated variation in behavior and peak encounter rate with detection distance, movement velocity, and rest durations. We then directly compared predation risk for Mysis by parameterizing both our tactile benthic (2D) encounter rate model for sculpin and a visual pelagic (3D) for rainbow smelt (Osmerus mordax). Tactile encounter rates were generally lower than visual rates for individual predators. However, population level encounter rates at night were greater in the benthic habitat than the pelagic habitat. Overall, our model estimates of encounter rates were consistent with the long-standing hypothesis that predation is an ultimate driver of DVM behavior.

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Thermal niche tracking in thirteen British temperate passerines

Lonero, I.; Eddowes, M. J.; Burgess, M. D.; Pearce-Higgins, J. W.; Phillimore, A. B.

2026-04-28 ecology 10.64898/2026.04.24.720627 medRxiv
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Identifying how and why species vary in their ability to adjust to rapidly changing climates is a key challenge in ecology. While phenological shifts are well documented for birds and often studied in the context of tracking resource availability, less is known about the extent to which adjustments in phenology allow populations to track a consistent thermal niche. In particular, there has been little examination of how the extent of phenological thermal niche tracking compares over time versus space; a comparison that has the potential to inform on the underlying mechanisms. Here, we use data on breeding phenology derived from BTO Nest Record Scheme data, to examine the extent to which 13 passerine bird species track a consistent incubation thermal niche across years (both interannually and a year gradient) and along latitudinal and elevational gradients, and whether migrant and resident species differ in their tracking ability. Overall, we found support across species for partial tracking, with all species showing trends consistent with partial tracking across one or more axis, though for one species we could not reject the null hypothesis of no tracking. When we looked at average trends across species, we found significant tracking across interannual variation, latitude, and elevation, but not across a year trend. However, we found no evidence that tracking differs between residents and migrants, and for only a few species did we found evidence that species incubation thermal niche impacts on fitness. Taken together, our findings highlight the extent to which shifts in phenology can allow birds to track a thermal niche in a changing climate. The timing of a thermal niche provides a useful and widely-applicable yardstick to examine how changes in climate will impact on the abiotic conditions that populations experience.

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Mean environmental associations obscure drivers of zooplankton community dynamics

Beck, M.; Laux, L.; Irisson, J.-O.; Santini, L.; Schrodt, F.

2026-04-21 ecology 10.64898/2026.04.16.718861 medRxiv
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Zooplankton communities are influenced by multiple environmental factors, including temperature, nutrient and resource availability, which fluctuate seasonally and across years. While long-term average effects can identify overall drivers, they may overlook dynamic, context-dependent effects that govern short-term changes in diversity and abundance. Understanding and disentangling both perspectives is crucial for identifying and estimating the drivers that shape community structure under varying environmental states. Here, we applied Empirical Dynamic Modeling (CCM, SMap) to a 12-year weekly zooplankton time series to identify causal environmental drivers of taxonomic and morphological diversity and quantify how the influence of each driver shifts over time. We contrast these results with static long-term average effects inferred from Generalized Linear Models which included predictor sets identified using covariate adjustment and accounting for temporal autocorrelation. Drivers linked to long-term average associations differed from those regulating short-term zooplankton dynamics, revealing a decoupling between mean environmental effects and the drivers of temporal variability. Temperature emerged as a persistent regulator of zooplankton dynamics across multiple diversity dimensions, while variables commonly associated with background trophic conditions (e.g. particulate organic matter) were primarily associated with long-term patterns and showed limited dynamical relevance. Importantly, we find evidence for morphological homogenisation in response to short-term fluctuations in chlorophyll a, which was not detectable in long-term average relationships. This contrast highlights that mean environmental associations do not necessarily reflect the mechanisms governing community dynamics. Impacts might be underestimated if average effects appear weak, or misinterpreted if arising mainly from shared trends or seasonality rather than direct mechanisms Integrating both perspectives clarifies the identity and role of environmental drivers, improving inference and prediction of zooplankton community change through time.

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Time in the city: Long-term urban exposure predicts greater exploration and problem-solving in wild red foxes

Morton, B.; Thompson-Jones, D.; Adaway, K.; Sutter, K.; Matos, C.; Freer, G.; Soulsbury, C. D.

2026-03-12 animal behavior and cognition 10.1101/2025.09.26.678765 medRxiv
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Urbanisation is one of the most important forms of human-driven landscape change, altering wildlife populations in unprecedented ways. In terms of behaviour, for example, urbanisation is hypothesised to increase the likelihood of observing urban populations touching, exploring, and solving novel food-related tasks compared to rural areas. However, little is known about the impact of spatiotemporal patterns of urbanisation, particularly historical patterns of change, on these behaviours. We tested this in the worlds most urbanised carnivore, the red fox (Vulpes vulpes), by introducing novel food-related tasks (puzzle feeders) to 284 sites throughout Great Britain. We compared tactile and problem-solving behaviours in rural populations, recently colonised urban populations, and long-established urban populations (>40 years). Foxes from 27.4% of locations touched the tasks, foxes from 12.4% of locations solved them. Urban foxes were more likely to touch tasks compared to rural populations. Exploration time, exploratory diversity, and latency to touch tasks did not significantly differ across urban and rural locations. Urbanisation rate from 1994 to 2020 (26 years) did not significantly predict the likelihood of foxes touching or solving tasks across locations. Older urban populations - particularly from London - spent more time exploring tasks and displayed greater exploratory diversity and higher problem-solving success, despite more recent urban populations being equally likely to touch them. Collectively, our findings suggest that certain population characteristics, such as the likelihood of touching/engaging with novelty, potentially emerge early in urbanisation while other characteristics, such as greater exploratory and innovative behaviours, may emerge after long-term urban exposure across many decades. HighlightsO_LIHistorical impacts of urbanisation on wild animal behaviour are unclear. C_LIO_LIWe tested this with wild red foxes responses to novel food objects. C_LIO_LIUrban foxes were more likely to touch and exploit objects, especially from London. C_LIO_LIOlder urban foxes displayed more exploratory and innovative behaviours. C_LIO_LILength of urban exposure may help predict behavioural responses to novelty. C_LI

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Shifting forage selection subsidizes seasonal resource scarcity

Hendrix, J. G.; Ferraro, K. M.; Love, A. E.; Kusch, J. M.; Albrecht, D.; Leroux, S.; Webber, Q.; Vander Wal, E.

2026-03-17 ecology 10.64898/2026.03.13.711571 medRxiv
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O_LINitrogen (N) is limiting for terrestrial herbivores, particularly over winter. Caribou (Rangifer tarandus) have adapted to seasonal scarcity of N by accruing muscle mass during the growing season when N is more abundant. C_LIO_LINitrogen stored in muscle tissue is then relied upon during winter to compensate for dietary deficits. Once their diet shifts from N-rich vascular plants to N-poor lichen over winter, caribou can lose [~]30% of their muscle mass. As catabolized N is shed in urine on wintering grounds, caribou could act as elemental transport across seasons and landscapes. Furthermore, if deposited N is taken up by lichen or other winter forage, it might enrich the nitrogen-poor winter diet of caribou in the future. C_LIO_LIWe tested this potential transport via three steps. We analysed Cladonia spp. lichen and vascular plants upon which caribou forage across Fogo Island, Newfoundland, using %N content as our metric of forage quality. We then compared seasonal habitat selection responses to forage quality by caribou using integrated step selection analyses. In summer, caribou selected areas with higher vascular plant %N but did not select nor avoid Cladonia quality. In contrast, caribou selected sites with higher quality Cladonia in winter but responded neutrally to vascular plant quality. C_LIO_LIWe compared seasonal distributions of caribou to determine whether nitrogen consumed in summer and deposited in winter would occur in spatially discrete locations. Population-level kernel density estimates for summer and winter in this island herd were mostly non-overlapping, lending credence to the potential landscape effects of N transport. C_LIO_LIWhen viewed together with established seasonal changes in woodland caribou physiology, sociality, and forage preferences, the shifts in habitat selection and seasonal ranges we observe here could serve as an adaptive strategy for caribou to recycle N and mitigate winter nutrient scarcity. C_LI

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Spatiotemporal patterns of breeding challenge the successive broods model in a migratory butterfly

Diethelm, A. C.; Schultz, C. B.; McKnight, S. R.; Deen, E. A.; Lehner, A. M.; Pelton, E. M.; Crone, E. E.

2026-04-04 ecology 10.64898/2026.04.01.715883 medRxiv
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Migration is widely recognized as a strategy for animals to track seasonally shifting resources. Yet, seasonal and spatial dynamics of migration are challenging to study, particularly for difficult-to-track insects. Among insects, monarch butterflies (Danaus plexippus) have a well-documented fall migration, but spring breeding recolonization remains poorly understood, particularly for the western population. We conducted multi-year surveys across six regions in the western United States to characterize monarch breeding phenology and evaluate three related hypotheses: (i) the successive broods model, with discrete generations shifting activity across the breeding range, (ii) a diffusion-like expansion model with overlapping breeding periods, and (iii) a mid-summer lull model with temporary summer declines in breeding for areas near the overwintering habitat. Monarch immature presence served as an indicator of local breeding activity. Our results do not support the successive broods or mid-summer lull hypotheses. Breeding onset occurred earlier near overwintering areas and gradually expanded north-and eastward, with sustained activity in many regions throughout the season. Termination of breeding also occurred earlier at more distant sites, resulting in longer breeding activity nearer to overwintering habitat. Immature monarch density declined with distance from overwintering areas at onset and termination, suggesting delayed colonization of peripheral regions. Together, these results support a diffusion-like expansion of breeding rather than sequential generational replacement. Western monarchs also do not initiate or terminate breeding in close synchrony with host plant availability, contrary to predictions from resource-tracking theory. These findings highlight fundamental differences between western monarch breeding dynamics and paradigms for eastern monarchs, demonstrating that a single species can employ fundamentally different spatial strategies for recolonizing its breeding range in different regions. More generally, these results distinguish insect migration from systems with direct movements between wintering and breeding habitats, and underscore the value of long-term, landscape-scale monitoring for resolving habitat use across heterogeneous environments.

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Environmental microbial communities and host selection shape larval microbiomes

Hendricks, S. F.; Tan, A. L.; Williams, A. G.; Buckley, K. M.; Strader, M. E.

2026-05-15 ecology 10.64898/2026.05.14.725214 medRxiv
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Ocean warming is altering abiotic environments and biotic interactions experienced by marine organisms, where sensitive early developmental windows occur in biologically complex seawater communities. The impact of these interactions on developmental processes and fitness in hosts is not well understood, but likely contingent on the establishment of a host-associated microbiome. Here, we hypothesize that temperature and microbial exposure during embryogenesis influence larval microbiome assembly and host morphology. Strongylocentrotus purpuratus embryos were raised in low microbial richness (LMR) or high microbial richness (HMR) seawater at ambient (14 {degrees}C) or elevated (18 {degrees}C) temperature, then collected at 2, 4, and 6 days post-fertilization (dpf) following multiple feedings. Higher microbial diversity was observed in larvae that developed in HMR seawater when compared to LMR. Differences in relative abundances of dominant microbial families between seawater and larvae suggest some degree of host selectivity in microbiome assembly. Temperature did not strongly alter microbiome composition, but both temperature and microbial condition led to differences in larval morphology by 6 dpf, potentially due to enrichment of microbes with chemoheterotrophic functions. By linking how temperature and microbial communities interact with host development, we contribute novel insights into how early-life environmental conditions impact holobiont formation and morphology. One sentence summaryEarly developmental temperature and microbial conditions shape larval microbiome establishment and morphology.

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Carryover effects modulate spring phenological responses to temperature in a herbivorous insect

Rattigan, S. D.; Beaupere, L. C.; Sheldon, B. C.; Learmonth, R.

2026-04-03 ecology 10.64898/2026.04.01.715835 medRxiv
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O_LIPhenological shifts are a major ecological consequence of climate change, yet studies often focus on single life stages meaning that the potential for carryover effects between life stages remains poorly understood. Failing to account for these effects may lead to inaccurate estimates of phenological shifts, with consequences for predicted synchrony among interacting species. This is especially relevant for temperate systems where climate warming is occurring unevenly across the year. C_LIO_LIHere, we investigated how temperature experienced the previous autumn and winter (during the pupal and egg stage) influences spring phenology in the winter moth (Operophtera brumata), a herbivorous insect with distinct life stages. Using 50 years of local climate data to create five experimental temperature regimes, we first quantified phenotypic plasticity in the duration and temporal variability of pupal and egg development. We then examined how timing of adult moth emergence affects timing of offspring hatching. C_LIO_LIWe found divergent effects of temperature on different life stages; pupal development time was shortest at intermediate temperatures while egg development time decreased linearly with increasing temperature. Furthermore, phenological shifts due to the conditions experienced by the mother were carried over to influence the phenology of her offspring. While this carryover effect was partially compensated during subsequent stages, compensation decreased under warming conditions. C_LIO_LIThese results refine our understanding of the sensitivity of the annual cycle of winter moth phenology to variation in temperature with potential implications for population dynamics and interspecific interactions. Overall, our findings highlight the need to consider the impacts of warming across multiple life stages so that carryover effects can be properly accounted for. Doing so will improve predictions of phenological shifts under future climates. C_LI

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A look inside the net: freshwater turtles assort with conspecifics in feeding aggregations

Menzies, C. M.; James, R.; Riley, J.; Davy, C. M.; Dakin, R.

2026-04-15 animal behavior and cognition 10.64898/2026.04.13.718235 medRxiv
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Non-avian reptiles have been assumed to be non-social for many years, yet recent studies show diverse social behaviours in squamates, crocodilians, and turtles. Here, we investigate social structure within feeding aggregations of three freshwater turtle species caught in baited traps in a coastal marsh over 12 years. In 488 instances in which traps contained turtles, 45% contained multiple individuals, and these aggregations were strongly positively assorted by species. midland painted turtles (Chrysemys picta) and Blandings turtles (Emydoidea blandingii) were captured with conspecifics more often than expected in a non-social null model. Snapping turtles (Chelydra serpentina), the largest species in this study, were caught with conspecifics at rates consistent with the non-social null model, and were avoided by heterospecifics. This suggests that species differences play a role in how feeding aggregations are structured, with painted and Blandings turtles driving positive species assortment while avoiding snapping turtles around food sources. We did not detect significant intraspecific sex assortment in any of the three species, nor did turtle body size strongly affect the probability of aggregating with conspecifics at the perceived food source in the traps. Our study illustrates how long-term monitoring data can be used to investigate social structure in wild populations, an approach that may be valuable for species of conservation concern. Significance StatementReptile sociality has been historically overlooked, but recent work has revealed intriguing social behaviours in non-avian reptiles. We investigated associations among three species of freshwater turtle, captured in baited traps over 12 years of trapping. Turtles in these feeding aggregations grouped with their own species more often than expected by chance. This result was driven by the two smaller-bodied species (midland painted turtle and Blandings turtle), which were more likely to be caught with conspecifics than with other species. In contrast, the largest species (snapping turtle) showed no evidence of attraction to other snapping turtles, and midland painted turtles and Blandings turtles showed avoidance of the larger snapping turtles. Our analyses illustrate how long-term monitoring data can be used to uncover previously unrecognized social behaviour in turtles and other species in which behaviour is difficult to observe directly.

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Resource abundance and dietary specialization predict elevational migration in a hyperdiverse montane bird community

Menon, T.; Tyagi, A.; Managave, S.; Ramakrishnan, U.; Srinivasan, U.

2026-03-20 ecology 10.64898/2026.03.18.710293 medRxiv
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Migration is a well-described behavioural strategy that allows species to track variation in resources and climatic conditions by moving in response to seasonality. A common form is elevational migration, an annual short-distance movement undertaken by many mountain bird species globally. While studies show that the timing of migration may relate to food availability, the mechanisms determining which species migrate remain unclear. Our study investigated if the degree of dietary specialization explains why some high-elevation bird species in seasonal environments migrate downslope for the winter while others remain resident at high altitudes despite the apparent scarcity of their preferred food resources. We mist-netted birds along a 2300-m elevational gradient in the Eastern Himalaya and collected blood and faecal samples from 261 individual birds belonging to 18 species of high-elevation residents (ten) and elevational migrants (eight) in their breeding and wintering ranges. Using stable isotope ratios of carbon and nitrogen in whole blood and faecal DNA metabarcoding, we compared their seasonal trophic levels and dietary niches. Nitrogen isotope ratios showed that residents had a substantially lower trophic position in the winter compared to summer (-0.35 [-0.52, -0.17]), whereas migrants had a slightly higher trophic position in the winter (0.15 [-0.02, 0.32]). This trophic shift in residents was likely due to a decrease in insectivory and an increase in frugivory in the winter. The frequency of key insect orders (Lepidoptera, Hemiptera, and Coleoptera) declined by 20-35% in their winter diets alongside an increase in fruit, particularly from the family Polygonaceae (0.33 [0.18, 0.46]). Additionally, compared with residents, migrants showed greater overlap in their dietary niches between summer and winter (98% vs 80%). Because arthropod abundances in the Himalayas peak at high elevations in the summer and decline in the winter, we suggest that elevational migrants are likely dietary specialists that track resources, while high-elevation residents are dietary generalists that supplement their winter diet with fruit and nectar because of the scarcity of arthropods. These findings indicate that a species dietary specialization is linked to its migratory behaviour, providing a potential mechanistic explanation for how different species solve the challenge of seasonal resource limitation.

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Harsh snow conditions reduce body mass and reproductive success of an alpine ungulate, inducing carry-over effects.

Cremel, K.; Festa-Bianchet, M.; Langlois, A.; Pelletier, F.

2026-05-07 ecology 10.64898/2026.05.05.723074 medRxiv
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Winter can affect animal population dynamics by limiting resource availability and increasing energetic costs of movement caused by deep snow. Given the rapid alteration of snowpack properties due to climate change, quantifying how snow characteristics influence reproduction and physical condition is critical. We evaluated how snow cover duration, depth, and density affect spring body mass, reproduction probability, and subsequent autumn body mass of bighorn sheep (Ovis canadensis) using 45 years of individual-based data at Ram Mountain, Alberta, Canada, along with historical snow records reconstructed via the SNOWPACK model. Using Bayesian structural equation modeling, we quantified the direct and indirect effects of snow across different sex and age classes. Long and deep snow covers reduced spring body mass across all demographic groups, with yearlings, especially males, losing up to 0.12 kg per additional cm of snow depth. Harsh snow conditions reduced the probability of reproduction for adult females and generated a compensatory indirect effect on mass by avoiding the energetic costs of reproduction. In contrast, yearlings showed no compensatory responses and entered the following autumn in poor condition (up to 14% lighter for males and 8% for females following the deepest snow years). The impact of snow density on autumn mass of adult males was density-dependent, shifting from beneficial at low density (+0.09 kg per kg/m3) to detrimental at high density (-0.04 kg per kg/m3). The effects of snow conditions generate persistent, context-dependent carry-over effects across seasons. Our study suggests that distinct demographic groups rely on different mechanisms to cope with environmental constraints, highlighting complex, time-lagged consequences of changing winter climate on alpine herbivore populations.

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Species-specific responses of helminths to temperature and moisture: long-term and multi-scale analyses in a free-living rodent

Olarewaju, A. E.; Zawadzka-Pawlewska, U.; Ayansola, V. I.; Dunn, A.; Rybinska, A.; Bajer, A.; Behnke, J.; Alsarraf, M.; Dwuznik-Szarek, D.; Tołkacz, K.; Grzybek, M.; Behnke-Borowczyk, J.; Kloch, A.

2026-04-23 ecology 10.64898/2026.04.21.719831 medRxiv
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Parasite infections in wildlife vary across time and space due to interactions among host biology, ecological processes, and climatic variability. Under ongoing climate change, understanding how temperature, precipitation, or humidity influences parasite dynamics is important for predicting shifts in infection patterns and host-parasite interactions. Here, we examine how variation in climatic conditions is associated with helminth infections in a free-living rodent, the bank vole (Myodes glareolus), across 17 years and multiple spatial scales. Using zero-inflated generalised linear models, we quantified the effects of climatic variables on individual parasite burden. Climatic conditions (temperature and humidity or precipitation) affected helminth infections across all analysed scales, though the strength and direction of these effects differed among parasite species and between temporal and spatial scales. In the temporal dataset, parasite load was associated with seasonal variation in weather conditions, whereas in the spatial datasets, infection levels were linked to yearly average climatic variables. The differences reflect species-specific parasites life histories and transmission strategies. Our findings highlight the importance of analysing individual parasite species rather than overall parasite load or aggregated infection indices when assessing the impacts of climatic variation on host-parasite dynamics.

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Sex change in a protogynous hermaphrodite fish: life-history and social strategies in female cleaner wrasse Labroides dimidiatus

Pessina, L.; Bshary, R.

2026-04-08 animal behavior and cognition 10.64898/2026.04.06.716686 medRxiv
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Protogynous sex change, where individuals first function as females and later as males, is a key life-history strategy among polygynous reef fishes. In haremic systems, sex change is typically socially regulated, with dominants suppressing subordinates sex change through aggression. Females within a harem form a size-based hierarchy that can remain stable in most species through the threat of eviction. We studied a different situation in the cleaner wrasse Labroides dimidiatus, where larger females have incomplete control, as they spend most of their time alone at their own cleaning territory. We tracked over 400 individuals for 12 months, recording growth, behavior, social organization, and sex change. We confirmed earlier reports that both sexes direct aggression primarily at those ranked immediately below them. However, we observed 30 cases where smaller females outgrew larger ones, revealing hierarchy instability. Of 42 sex change events, 43% occurred in presence of the male, and half of these early sex changers were not the largest female, but individuals overlooked by the male. Fast growth relative to harem-mates and harem switching increased the likelihood of sex change. Local population densities also influenced growth and sex change, with individuals in high-density demes growing faster and changing sex at larger sizes. Our findings reveal flexible sex change dynamics in a system with incomplete social dominance. Such incomplete control and observations that becoming male confers both higher reproductive success and survival highlight the need to expand game-theoretical and life-history frameworks to encompass such strategic flexibility. Lay summaryDominant cleaner wrasse cannot fully control subordinates as individuals occupy distinct core areas. Tracking 400 fish for a year, we found that smaller females could outgrow initially larger ones, and early sex change despite a larger male. Fast growth and harem switching increased the chances of becoming male. Population density also shaped these strategies. Our findings reveal flexible sex change dynamics in a system where becoming male confers both higher reproductive success and survival.

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Agricultural intensification favours an introduced bumble bee over its native congener through differences in foraging range, habitat association, and lineage continuity

Melanson, J. B.; Kelly, T. T.; Clermont, N.; Koch, J. B. U.; Kremen, C.

2026-05-12 ecology 10.64898/2026.05.07.723627 medRxiv
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O_LIAgricultural intensification can support the expansion of introduced species which are highly adapted to human-modified landscapes, but the mechanisms by which this occurs are often unclear. C_LIO_LIHere we investigate the spatial ecology of a rapidly expanding introduced bumble bee (Bombus impatiens) and a native congener (B. mixtus) in agricultural landscapes of southwestern British Columbia, Canada. We used microsatellite genotyping and spatially explicit capture-recapture models to compare the foraging distance of the two species, and fitted hierarchical models to compare their abundance, behaviour (nest searching vs foraging), and lineage survival as a function of landscape composition and configuration. C_LIO_LIWe found that B. impatiens had a broader foraging range than B. mixtus, and that its colony/worker abundance were positively associated with the surrounding area of residential gardens, but decreased relative to B. mixtus abundance in response to increasing seminatural area. In contrast, B. mixtus colony abundance decreased in landscapes with a greater area of intensively managed berry crops. C_LIO_LIWe observed fewer B. impatiens queens per survey in landscapes with more low-disturbance landcover, and hypothesize space use of this species could be shaped by concentration on potential nesting habitat. Consistent with this observation, nest searching behaviour was more common for B. impatiens queens, while B. mixtus queens were primarily observed foraging, suggesting these two species derive different value from agricultural landscapes during colony establishment. C_LIO_LIFinally, we found that the rate of lineage re-capture between 2022 colonies and 2023 spring queens was nearly 10-fold higher for B. impatiens than for B. mixtus, indicating a greater capacity of the introduced species to complete its life cycle in agro-natural landscape mosaics. C_LIO_LIOur results suggest that differences in spatial ecology may contribute to the differential success of these two species in human-modified landscapes, and provide insight into the mechanisms by which land-use change shapes community composition. C_LI O_FIG O_LINKSMALLFIG WIDTH=184 HEIGHT=200 SRC="FIGDIR/small/723627v1_ufig1.gif" ALT="Figure 1"> View larger version (62K): org.highwire.dtl.DTLVardef@1e72eacorg.highwire.dtl.DTLVardef@a958a0org.highwire.dtl.DTLVardef@1f970b6org.highwire.dtl.DTLVardef@156f522_HPS_FORMAT_FIGEXP M_FIG C_FIG Graphical abstract. Coloured diagrams of B. mixtus and B. impatiens are credited to Elaine Evans and the Xerces Society, with permission.

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Population and community responses to the fast, slow, and seasonal components of environmental variation

Hernandez-Carrasco, D.; Koerich, G.; Gillis, A. J.; Harris, H. A. L.; Heller, N. R.; McCabe, C.; Lennox, R. S.; Shabanov, I.; Wang, L.; Lai, H. R.; Tonkin, J. D.

2026-03-20 ecology 10.64898/2026.03.18.712754 medRxiv
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Theory suggests that different components of environmental fluctuations, from daily and seasonal cycles to multidecadal trends, can have distinct and even opposing effects on species abundances and community dynamics, depending on their specific adaptations. But empirical research that deconstructs the influence of these different cycles on communities is lacking. Here, we used long-term biological monitoring data together with flow records of rivers across New Zealand to (i) investigate the role of fast, slow, and seasonal river-flow fluctuations in structuring macroinvertebrate communities; and (ii) to assess whether life-history and mobility traits mediate the response. Using joint species distribution models, we found striking differences in taxon and community responses to the different components of river flow variation. Responses to slow fluctuations were generally stronger and better predicted by traits, while responses to seasonal fluctuations were highly heterogeneous. Fast increases in flow, typical of flooding events, had pervasive negative effects on species abundances, but the severity of impact partly depended on mobility traits. Our results suggest that different ecological mechanisms underpin the response to distinct environmental fluctuations, highlighting the value of jointly considering multiple temporal scales of variation and species functional traits to understand and predict how communities reorganise under fluctuating environmental regimes.